Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
SCN4AP35499 AC087499.5-201ENST00000452760 1342 ntBASIC20.24■□□□□ 0.83
SCN4AP35499 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC20.24■□□□□ 0.83
SCN4AP35499 REXO1L11P-201ENST00000620964 1927 ntBASIC20.24■□□□□ 0.83
SCN4AP35499 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.23■□□□□ 0.83
SCN4AP35499 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.23■□□□□ 0.83
SCN4AP35499 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 AC104794.3-201ENST00000566840 1248 ntBASIC20.23■□□□□ 0.83
SCN4AP35499 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 AFG3L1P-217ENST00000557444 2447 ntBASIC20.23■□□□□ 0.83
SCN4AP35499 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.23■□□□□ 0.83
SCN4AP35499 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 FAM86MP-201ENST00000340703 885 ntBASIC20.23■□□□□ 0.83
SCN4AP35499 PP14571-201ENST00000404327 934 ntTSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC20.23■□□□□ 0.83
SCN4AP35499 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC20.23■□□□□ 0.83
SCN4AP35499 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SCN4AP35499 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
SCN4AP35499 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 AL080243.2-201ENST00000418783 582 ntBASIC20.22■□□□□ 0.83
SCN4AP35499 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC20.22■□□□□ 0.83
SCN4AP35499 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.22■□□□□ 0.83
SCN4AP35499 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.22■□□□□ 0.83
SCN4AP35499 AC073389.1-201ENST00000595595 795 ntBASIC20.22■□□□□ 0.83
SCN4AP35499 SPTSSB-204ENST00000617024 1292 ntBASIC20.22■□□□□ 0.83
SCN4AP35499 AC007431.3-201ENST00000623221 587 ntBASIC20.22■□□□□ 0.83
SCN4AP35499 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.22■□□□□ 0.83
SCN4AP35499 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
SCN4AP35499 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SCN4AP35499 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN4AP35499 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
SCN4AP35499 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN4AP35499 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 AC084346.2-201ENST00000607097 949 ntBASIC20.21■□□□□ 0.83
SCN4AP35499 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN4AP35499 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SCN4AP35499 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
SCN4AP35499 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC20.2■□□□□ 0.82
SCN4AP35499 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 CETN4P-206ENST00000642099 2168 ntBASIC20.2■□□□□ 0.82
SCN4AP35499 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN4AP35499 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN4AP35499 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.2■□□□□ 0.82
SCN4AP35499 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 SLC7A15P-201ENST00000424028 1363 ntBASIC20.2■□□□□ 0.82
SCN4AP35499 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SCN4AP35499 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
SCN4AP35499 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC20.2■□□□□ 0.82
SCN4AP35499 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 SNX29P1-201ENST00000548357 1007 ntBASIC20.2■□□□□ 0.82
SCN4AP35499 BANF1P1-201ENST00000553684 263 ntBASIC20.2■□□□□ 0.82
SCN4AP35499 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SCN4AP35499 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.19■□□□□ 0.82
SCN4AP35499 BTBD7P1-201ENST00000447253 1453 ntBASIC20.19■□□□□ 0.82
SCN4AP35499 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
SCN4AP35499 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms