Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC027601.4-201ENST00000611259 610 ntBASIC18.28■□□□□ 0.52
BDNFP23560 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
BDNFP23560 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.28■□□□□ 0.52
BDNFP23560 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.28■□□□□ 0.52
BDNFP23560 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
BDNFP23560 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
BDNFP23560 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.27■□□□□ 0.52
BDNFP23560 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
BDNFP23560 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.27■□□□□ 0.52
BDNFP23560 AL590787.1-201ENST00000568856 1315 ntBASIC18.27■□□□□ 0.52
BDNFP23560 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.27■□□□□ 0.52
BDNFP23560 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.27■□□□□ 0.52
BDNFP23560 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
BDNFP23560 MED15P5-201ENST00000423150 992 ntBASIC18.27■□□□□ 0.52
BDNFP23560 AC007967.2-201ENST00000432613 625 ntBASIC18.27■□□□□ 0.52
BDNFP23560 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 IGHV3-65-201ENST00000523210 341 ntBASIC18.27■□□□□ 0.52
BDNFP23560 AC008667.4-201ENST00000607370 168 ntBASIC18.27■□□□□ 0.52
BDNFP23560 AL805961.1-202ENST00000641562 540 ntBASIC18.27■□□□□ 0.52
BDNFP23560 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
BDNFP23560 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.27■□□□□ 0.52
BDNFP23560 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
BDNFP23560 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.51
BDNFP23560 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
BDNFP23560 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
BDNFP23560 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
BDNFP23560 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.26■□□□□ 0.51
BDNFP23560 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
BDNFP23560 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 AC108073.2-201ENST00000464002 357 ntBASIC18.26■□□□□ 0.51
BDNFP23560 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.26■□□□□ 0.51
BDNFP23560 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.26■□□□□ 0.51
BDNFP23560 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
BDNFP23560 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.26■□□□□ 0.51
BDNFP23560 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.26■□□□□ 0.51
BDNFP23560 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.26■□□□□ 0.51
BDNFP23560 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.26■□□□□ 0.51
BDNFP23560 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
BDNFP23560 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
BDNFP23560 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
BDNFP23560 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
BDNFP23560 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
BDNFP23560 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.25■□□□□ 0.51
BDNFP23560 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
BDNFP23560 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.25■□□□□ 0.51
BDNFP23560 FAM197Y3-203ENST00000618346 717 ntBASIC18.25■□□□□ 0.51
BDNFP23560 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
BDNFP23560 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
BDNFP23560 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
BDNFP23560 PMS2P7-201ENST00000506558 1336 ntBASIC18.24■□□□□ 0.51
BDNFP23560 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
BDNFP23560 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
BDNFP23560 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
BDNFP23560 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
BDNFP23560 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms