Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
COL5A1P20908 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 AC015922.1-201ENST00000421102 1152 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.49■□□□□ 0.23
COL5A1P20908 TSPY16P-201ENST00000449843 468 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC16.49■□□□□ 0.23
COL5A1P20908 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.49■□□□□ 0.23
COL5A1P20908 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.49■□□□□ 0.23
COL5A1P20908 AC012645.4-201ENST00000610691 1061 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 AC008761.3-201ENST00000624803 892 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 NOC2LP2-201ENST00000407594 1944 ntBASIC16.49■□□□□ 0.23
COL5A1P20908 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.49■□□□□ 0.23
COL5A1P20908 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.49■□□□□ 0.23
COL5A1P20908 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC16.49■□□□□ 0.23
COL5A1P20908 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
COL5A1P20908 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
COL5A1P20908 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC16.48■□□□□ 0.23
COL5A1P20908 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.48■□□□□ 0.23
COL5A1P20908 SPDYE7P-202ENST00000420373 878 ntBASIC16.48■□□□□ 0.23
COL5A1P20908 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC16.48■□□□□ 0.23
COL5A1P20908 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.48■□□□□ 0.23
COL5A1P20908 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
COL5A1P20908 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
COL5A1P20908 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL5A1P20908 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 AC069120.2-201ENST00000524091 540 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 SLC25A39P2-201ENST00000537614 270 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.47■□□□□ 0.23
COL5A1P20908 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
COL5A1P20908 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.47■□□□□ 0.23
COL5A1P20908 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
COL5A1P20908 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC16.47■□□□□ 0.23
COL5A1P20908 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
COL5A1P20908 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.47■□□□□ 0.23
COL5A1P20908 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.47■□□□□ 0.23
COL5A1P20908 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.47■□□□□ 0.23
COL5A1P20908 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.47■□□□□ 0.23
COL5A1P20908 HNRNPA1P40-201ENST00000426371 1278 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 UGT1A2P-201ENST00000454886 866 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL5A1P20908 KRT8P23-201ENST00000560090 1207 ntBASIC16.47■□□□□ 0.23
COL5A1P20908 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms