Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.23■□□□□ 0.51
PDGFRAP16234 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.23■□□□□ 0.51
PDGFRAP16234 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PDGFRAP16234 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.23■□□□□ 0.51
PDGFRAP16234 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.23■□□□□ 0.51
PDGFRAP16234 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDGFRAP16234 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.23■□□□□ 0.51
PDGFRAP16234 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
PDGFRAP16234 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.23■□□□□ 0.51
PDGFRAP16234 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDGFRAP16234 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.23■□□□□ 0.51
PDGFRAP16234 AP001094.4-201ENST00000579008 2176 ntBASIC18.23■□□□□ 0.51
PDGFRAP16234 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 AC116353.5-201ENST00000638148 1699 ntBASIC18.22■□□□□ 0.51
PDGFRAP16234 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PDGFRAP16234 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
PDGFRAP16234 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.22■□□□□ 0.51
PDGFRAP16234 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
PDGFRAP16234 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.22■□□□□ 0.51
PDGFRAP16234 FAAHP1-202ENST00000446499 1238 ntBASIC18.22■□□□□ 0.51
PDGFRAP16234 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.22■□□□□ 0.51
PDGFRAP16234 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.22■□□□□ 0.51
PDGFRAP16234 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 REXO1L6P-202ENST00000619970 1078 ntBASIC18.22■□□□□ 0.51
PDGFRAP16234 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
PDGFRAP16234 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
PDGFRAP16234 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDGFRAP16234 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
PDGFRAP16234 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDGFRAP16234 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDGFRAP16234 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDGFRAP16234 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 AC079781.3-201ENST00000449110 356 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 SAPCD2P3-201ENST00000455031 850 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
PDGFRAP16234 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
PDGFRAP16234 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 AP001269.4-201ENST00000609611 512 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 AL031008.1-201ENST00000619963 541 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDGFRAP16234 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDGFRAP16234 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
PDGFRAP16234 AP005117.1-201ENST00000584346 1413 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 AL135999.2-201ENST00000622438 1686 ntBASIC18.21■□□□□ 0.51
PDGFRAP16234 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PDGFRAP16234 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.21■□□□□ 0.51
PDGFRAP16234 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
PDGFRAP16234 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDGFRAP16234 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDGFRAP16234 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.2■□□□□ 0.5
PDGFRAP16234 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.2■□□□□ 0.5
PDGFRAP16234 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDGFRAP16234 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.2■□□□□ 0.5
PDGFRAP16234 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDGFRAP16234 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDGFRAP16234 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PDGFRAP16234 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms