Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SDC3O75056 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 RHOQP3-201ENST00000437982 621 ntBASIC16.93■□□□□ 0.3
SDC3O75056 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 AC074386.1-202ENST00000463561 864 ntBASIC16.93■□□□□ 0.3
SDC3O75056 CYMP-203ENST00000474680 1263 ntBASIC16.93■□□□□ 0.3
SDC3O75056 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 RFPL4AP1-201ENST00000530883 850 ntBASIC16.93■□□□□ 0.3
SDC3O75056 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.93■□□□□ 0.3
SDC3O75056 AC023141.13-201ENST00000604991 943 ntBASIC16.93■□□□□ 0.3
SDC3O75056 LINC02084-201ENST00000606069 1096 ntBASIC16.93■□□□□ 0.3
SDC3O75056 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 AC106028.4-201ENST00000614509 607 ntBASIC16.93■□□□□ 0.3
SDC3O75056 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
SDC3O75056 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC16.93■□□□□ 0.3
SDC3O75056 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SDC3O75056 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.93■□□□□ 0.3
SDC3O75056 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC3O75056 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC3O75056 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.92■□□□□ 0.3
SDC3O75056 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.92■□□□□ 0.3
SDC3O75056 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.92■□□□□ 0.3
SDC3O75056 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 AP002472.1-201ENST00000577490 586 ntBASIC16.92■□□□□ 0.3
SDC3O75056 AC091812.2-201ENST00000619081 385 ntBASIC16.92■□□□□ 0.3
SDC3O75056 AC007064.4-201ENST00000637740 555 ntBASIC16.92■□□□□ 0.3
SDC3O75056 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 AL590787.1-201ENST00000568856 1315 ntBASIC16.92■□□□□ 0.3
SDC3O75056 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SDC3O75056 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.92■□□□□ 0.3
SDC3O75056 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.92■□□□□ 0.3
SDC3O75056 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC3O75056 AC046185.3-201ENST00000623228 1824 ntBASIC16.91■□□□□ 0.3
SDC3O75056 FLJ13224-201ENST00000313737 1514 ntBASIC16.91■□□□□ 0.3
SDC3O75056 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.91■□□□□ 0.3
SDC3O75056 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
SDC3O75056 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.91■□□□□ 0.3
SDC3O75056 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.91■□□□□ 0.3
SDC3O75056 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 CXCL1P1-201ENST00000502804 216 ntBASIC16.91■□□□□ 0.3
SDC3O75056 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.91■□□□□ 0.3
SDC3O75056 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.91■□□□□ 0.3
SDC3O75056 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC3O75056 AC027612.4-201ENST00000605371 583 ntBASIC16.91■□□□□ 0.3
SDC3O75056 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.91■□□□□ 0.3
SDC3O75056 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.91■□□□□ 0.3
SDC3O75056 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SDC3O75056 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms