Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
SHOX2O60902 AP003097.1-201ENST00000530657 1135 ntBASIC17.4■□□□□ 0.38
SHOX2O60902 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.4■□□□□ 0.38
SHOX2O60902 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.4■□□□□ 0.38
SHOX2O60902 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 TSPY26P-202ENST00000565928 3884 ntBASIC17.4■□□□□ 0.38
SHOX2O60902 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.4■□□□□ 0.38
SHOX2O60902 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SHOX2O60902 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
SHOX2O60902 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHOX2O60902 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
SHOX2O60902 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.39■□□□□ 0.38
SHOX2O60902 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SHOX2O60902 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
SHOX2O60902 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.39■□□□□ 0.37
SHOX2O60902 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC17.39■□□□□ 0.37
SHOX2O60902 KRASP1-201ENST00000407852 552 ntBASIC17.39■□□□□ 0.37
SHOX2O60902 HLA-L-209ENST00000420110 1011 ntBASIC17.39■□□□□ 0.37
SHOX2O60902 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
SHOX2O60902 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC17.39■□□□□ 0.37
SHOX2O60902 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.39■□□□□ 0.37
SHOX2O60902 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC17.39■□□□□ 0.37
SHOX2O60902 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SHOX2O60902 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 AL391256.1-201ENST00000443260 1855 ntBASIC17.39■□□□□ 0.37
SHOX2O60902 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SHOX2O60902 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SHOX2O60902 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SHOX2O60902 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.39■□□□□ 0.37
SHOX2O60902 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
SHOX2O60902 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC17.39■□□□□ 0.37
SHOX2O60902 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
SHOX2O60902 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.38■□□□□ 0.37
SHOX2O60902 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.38■□□□□ 0.37
SHOX2O60902 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SHOX2O60902 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.38■□□□□ 0.37
SHOX2O60902 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC17.38■□□□□ 0.37
SHOX2O60902 MIR4674-201ENST00000582457 87 ntBASIC17.38■□□□□ 0.37
SHOX2O60902 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC17.38■□□□□ 0.37
SHOX2O60902 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.38■□□□□ 0.37
SHOX2O60902 AC130371.2-201ENST00000619443 611 ntBASIC17.38■□□□□ 0.37
SHOX2O60902 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
SHOX2O60902 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.38■□□□□ 0.37
SHOX2O60902 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC17.38■□□□□ 0.37
SHOX2O60902 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.38■□□□□ 0.37
SHOX2O60902 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SHOX2O60902 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SHOX2O60902 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 KRT17P3-201ENST00000420566 1262 ntBASIC17.37■□□□□ 0.37
SHOX2O60902 KRT16P5-201ENST00000455284 522 ntBASIC17.37■□□□□ 0.37
SHOX2O60902 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.37■□□□□ 0.37
SHOX2O60902 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.37■□□□□ 0.37
SHOX2O60902 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.37■□□□□ 0.37
SHOX2O60902 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC17.37■□□□□ 0.37
SHOX2O60902 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.37■□□□□ 0.37
SHOX2O60902 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms