Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LMX1BO60663 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.29■□□□□ 0.04
LMX1BO60663 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.28■□□□□ 0.04
LMX1BO60663 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 BX276092.7-203ENST00000637198 1536 ntBASIC15.28■□□□□ 0.04
LMX1BO60663 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.28■□□□□ 0.04
LMX1BO60663 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC15.28■□□□□ 0.04
LMX1BO60663 MTCL1P1-201ENST00000446207 792 ntBASIC15.28■□□□□ 0.04
LMX1BO60663 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.28■□□□□ 0.04
LMX1BO60663 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.28■□□□□ 0.04
LMX1BO60663 AC005332.3-201ENST00000589904 676 ntBASIC15.28■□□□□ 0.04
LMX1BO60663 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 Z69720.1-201ENST00000601483 472 ntBASIC15.28■□□□□ 0.04
LMX1BO60663 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.28■□□□□ 0.04
LMX1BO60663 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 ADM-208ENST00000534464 1640 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.28■□□□□ 0.04
LMX1BO60663 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LMX1BO60663 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.28■□□□□ 0.04
LMX1BO60663 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
LMX1BO60663 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.27■□□□□ 0.04
LMX1BO60663 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC15.27■□□□□ 0.04
LMX1BO60663 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LMX1BO60663 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 CA12-203ENST00000422263 2556 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.27■□□□□ 0.04
LMX1BO60663 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LMX1BO60663 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
LMX1BO60663 AC068472.1-201ENST00000474589 881 ntBASIC15.27■□□□□ 0.04
LMX1BO60663 AP002469.2-201ENST00000531724 424 ntBASIC15.27■□□□□ 0.04
LMX1BO60663 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.27■□□□□ 0.04
LMX1BO60663 AL121912.1-201ENST00000603683 238 ntBASIC15.27■□□□□ 0.04
LMX1BO60663 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LMX1BO60663 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC15.27■□□□□ 0.04
LMX1BO60663 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1BO60663 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
LMX1BO60663 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
LMX1BO60663 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
LMX1BO60663 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC15.27■□□□□ 0.03
LMX1BO60663 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1BO60663 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.27■□□□□ 0.03
LMX1BO60663 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC15.27■□□□□ 0.03
LMX1BO60663 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1BO60663 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LMX1BO60663 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
LMX1BO60663 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.26■□□□□ 0.03
LMX1BO60663 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
LMX1BO60663 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LMX1BO60663 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms