Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 AC078925.2-201ENST00000624013 1973 ntBASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 DOC2GP-204ENST00000639052 2548 ntBASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 ATP5G1P1-201ENST00000448724 379 ntBASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 AC092068.3-201ENST00000587894 2016 ntBASIC17.42■□□□□ 0.38
TRIM49D1C9J1S8 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PON3-205ENST00000451904 1053 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 AC092171.3-201ENST00000610122 2651 ntBASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
TRIM49D1C9J1S8 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 MYCLP1-201ENST00000372451 1075 ntBASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC087499.1-201ENST00000418141 1075 ntBASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC109462.3-201ENST00000573934 613 ntBASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC005332.3-201ENST00000589904 676 ntBASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC019129.2-201ENST00000609837 1235 ntBASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM49D1C9J1S8 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms