Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 FAM86EP-206ENST00000510506 987 ntBASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 AC009533.2-201ENST00000543664 586 ntBASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
HIF3AQ9Y2N7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 LINC02012-201ENST00000608206 1725 ntBASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 AC093525.9-201ENST00000624961 1746 ntBASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.1
HIF3AQ9Y2N7 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 CCS-201ENST00000310190 942 ntTSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 KRT18P21-201ENST00000515767 1272 ntBASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 AL049597.2-201ENST00000565575 961 ntBASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 STK25P1-201ENST00000585406 838 ntBASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 NTF6B-201ENST00000591913 560 ntBASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 AL353593.2-201ENST00000602529 1483 ntBASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
HIF3AQ9Y2N7 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 KRT8P10-201ENST00000450021 1447 ntBASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
HIF3AQ9Y2N7 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms