Protein–RNA interactions for Protein: Q9ULT6

ZNRF3, E3 ubiquitin-protein ligase ZNRF3, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNRF3Q9ULT6 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 AC005412.3-201ENST00000580309 715 ntBASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ZNRF3Q9ULT6 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ZNRF3Q9ULT6 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 GOLGA6L11P-201ENST00000417252 1298 ntBASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ZNRF3Q9ULT6 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 CRB3P1-201ENST00000449338 276 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 AC109635.5-201ENST00000533593 962 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 SSH2-211ENST00000590153 570 ntTSL 4 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 MIR6080-201ENST00000617359 66 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 FLJ13224-201ENST00000313737 1514 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 AC012569.1-201ENST00000591191 1524 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ZNRF3Q9ULT6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNRF3Q9ULT6 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNRF3Q9ULT6 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNRF3Q9ULT6 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ZNRF3Q9ULT6 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ZNRF3Q9ULT6 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms