Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
MKS1Q9NXB0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AL162727.3-201ENST00000635661 2787 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 SLC25A3P1-201ENST00000443844 931 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AP002490.2-201ENST00000524791 560 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AC111152.3-201ENST00000569699 673 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AC005332.3-201ENST00000589904 676 ntBASIC17.15■□□□□ 0.34
MKS1Q9NXB0 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
MKS1Q9NXB0 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC17.14■□□□□ 0.34
MKS1Q9NXB0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 PCDHB17P-201ENST00000539533 2393 ntBASIC17.14■□□□□ 0.33
MKS1Q9NXB0 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 AC103564.2-201ENST00000432853 1299 ntBASIC17.14■□□□□ 0.33
MKS1Q9NXB0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
MKS1Q9NXB0 HLA-A-202ENST00000376806 1854 ntBASIC17.14■□□□□ 0.33
MKS1Q9NXB0 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 AC125634.1-201ENST00000438758 1403 ntBASIC17.13■□□□□ 0.33
MKS1Q9NXB0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.13■□□□□ 0.33
MKS1Q9NXB0 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 HBZP1-201ENST00000354915 429 ntBASIC17.13■□□□□ 0.33
MKS1Q9NXB0 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms