Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 TPR-209ENST00000613151 2478 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
CHMP1AQ9HD42 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ECEL1P2-202ENST00000465689 757 ntBASIC15.02■□□□□ -0
CHMP1AQ9HD42 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 NEK4P2-201ENST00000580004 1012 ntBASIC15.02■□□□□ -0
CHMP1AQ9HD42 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC15.02■□□□□ -0
CHMP1AQ9HD42 AL157888.1-201ENST00000631930 593 ntBASIC15.02■□□□□ -0
CHMP1AQ9HD42 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 BOC-212ENST00000485230 2173 ntTSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.02□□□□□ -0.01
CHMP1AQ9HD42 CYP2D8P-201ENST00000433633 1490 ntBASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 MMP23A-201ENST00000234610 1017 ntBASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 PVRIG2P-201ENST00000435460 978 ntBASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 CLN6-221ENST00000637494 765 ntTSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
CHMP1AQ9HD42 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms