Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM56Q9BRZ2 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 UBALD1-205ENST00000590891 2641 ntBASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 AL845331.1-201ENST00000424978 1190 ntBASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 AL671277.2-201ENST00000458060 996 ntBASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 CLN6-204ENST00000564752 900 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 AC106886.4-201ENST00000623557 2502 ntBASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRIM56Q9BRZ2 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 NTF6B-201ENST00000591913 560 ntBASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM56Q9BRZ2 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 AL645929.1-201ENST00000420084 975 ntBASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 AC096633.1-201ENST00000422446 749 ntBASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.74■□□□□ 0.43
TRIM56Q9BRZ2 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
TRIM56Q9BRZ2 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms