Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 FAM197Y8-203ENST00000450145 560 ntBASIC17.27■□□□□ 0.36
VPS35Q96QK1 BX005266.1-201ENST00000473402 457 ntBASIC17.27■□□□□ 0.36
VPS35Q96QK1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 AC073648.2-201ENST00000510116 352 ntBASIC17.27■□□□□ 0.36
VPS35Q96QK1 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 AC021087.4-201ENST00000563761 564 ntBASIC17.27■□□□□ 0.36
VPS35Q96QK1 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS35Q96QK1 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS35Q96QK1 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS35Q96QK1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS35Q96QK1 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS35Q96QK1 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS35Q96QK1 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS35Q96QK1 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.35
VPS35Q96QK1 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 KRT18P67-201ENST00000432816 1264 ntBASIC17.26■□□□□ 0.35
VPS35Q96QK1 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 AC018712.1-201ENST00000455767 687 ntBASIC17.26■□□□□ 0.35
VPS35Q96QK1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 MTDHP4-201ENST00000600287 670 ntBASIC17.26■□□□□ 0.35
VPS35Q96QK1 COPE-211ENST00000600932 1144 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 AC064862.7-201ENST00000604520 867 ntBASIC17.26■□□□□ 0.35
VPS35Q96QK1 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS35Q96QK1 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 AL139384.1-201ENST00000612143 3047 ntBASIC17.26■□□□□ 0.35
VPS35Q96QK1 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS35Q96QK1 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 AF186996.4-201ENST00000467186 377 ntBASIC17.25■□□□□ 0.35
VPS35Q96QK1 RNPS1P1-201ENST00000507437 918 ntBASIC17.25■□□□□ 0.35
VPS35Q96QK1 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 AC025062.2-201ENST00000605477 670 ntBASIC17.25■□□□□ 0.35
VPS35Q96QK1 LINC00896-202ENST00000609602 2128 ntBASIC17.25■□□□□ 0.35
VPS35Q96QK1 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS35Q96QK1 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS35Q96QK1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms