Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 UNC93B6-202ENST00000528242 690 ntBASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
NKX2-3Q8TAU0 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC073621.1-201ENST00000392730 636 ntBASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC107918.4-202ENST00000641623 219 ntBASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AC006504.4-201ENST00000592118 1568 ntBASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 AL138688.1-201ENST00000624851 1594 ntBASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
NKX2-3Q8TAU0 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 AC097637.2-201ENST00000624096 1997 ntBASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 KRT18P27-201ENST00000427733 1299 ntBASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
NKX2-3Q8TAU0 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 LETM1P2-201ENST00000597330 2178 ntBASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
NKX2-3Q8TAU0 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms