Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 AC073592.5-201ENST00000624854 528 ntBASIC21■□□□□ 0.95
VPS53Q5VIR6 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC21■□□□□ 0.95
VPS53Q5VIR6 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
VPS53Q5VIR6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
VPS53Q5VIR6 AC148477.5-201ENST00000625164 1645 ntBASIC21■□□□□ 0.95
VPS53Q5VIR6 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
VPS53Q5VIR6 AC004817.3-201ENST00000602957 2129 ntBASIC20.99■□□□□ 0.95
VPS53Q5VIR6 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 AC111152.3-201ENST00000569699 673 ntBASIC20.99■□□□□ 0.95
VPS53Q5VIR6 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS53Q5VIR6 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 SOD2-201ENST00000337404 991 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 STK25P1-201ENST00000585406 838 ntBASIC20.98■□□□□ 0.95
VPS53Q5VIR6 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS53Q5VIR6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AC079781.3-201ENST00000449110 356 ntBASIC20.97■□□□□ 0.95
VPS53Q5VIR6 SAPCD2P3-201ENST00000455031 850 ntBASIC20.97■□□□□ 0.95
VPS53Q5VIR6 FGFR3P6-201ENST00000457012 610 ntBASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 BMF-207ENST00000559701 630 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS53Q5VIR6 AP001094.4-201ENST00000579008 2176 ntBASIC20.97■□□□□ 0.95
VPS53Q5VIR6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms