Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SF3A1Q15459 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.11■□□□□ 0.81
SF3A1Q15459 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
SF3A1Q15459 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.1■□□□□ 0.81
SF3A1Q15459 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 AL121761.2-201ENST00000598007 1648 ntBASIC20.1■□□□□ 0.81
SF3A1Q15459 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 AC007967.3-201ENST00000434308 558 ntBASIC20.1■□□□□ 0.81
SF3A1Q15459 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.1■□□□□ 0.81
SF3A1Q15459 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 IGHV3-41-201ENST00000613121 348 ntBASIC20.1■□□□□ 0.81
SF3A1Q15459 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.1■□□□□ 0.81
SF3A1Q15459 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SF3A1Q15459 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.1■□□□□ 0.81
SF3A1Q15459 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
SF3A1Q15459 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
SF3A1Q15459 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SF3A1Q15459 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.09■□□□□ 0.81
SF3A1Q15459 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC20.09■□□□□ 0.81
SF3A1Q15459 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 AC005336.2-201ENST00000593183 939 ntBASIC20.09■□□□□ 0.81
SF3A1Q15459 AL139327.4-201ENST00000612362 153 ntBASIC20.09■□□□□ 0.81
SF3A1Q15459 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.09■□□□□ 0.81
SF3A1Q15459 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
SF3A1Q15459 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 AC125634.1-201ENST00000438758 1403 ntBASIC20.09■□□□□ 0.81
SF3A1Q15459 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SF3A1Q15459 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC20.09■□□□□ 0.81
SF3A1Q15459 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.08■□□□□ 0.81
SF3A1Q15459 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
SF3A1Q15459 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SF3A1Q15459 NKILA-202ENST00000614771 2598 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 AC005332.1-201ENST00000577698 1310 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SF3A1Q15459 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.08■□□□□ 0.81
SF3A1Q15459 KRT8P26-201ENST00000534154 1276 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 AL049597.2-201ENST00000565575 961 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 AC090616.6-201ENST00000582640 721 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 NTF6B-201ENST00000591913 560 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.08■□□□□ 0.81
SF3A1Q15459 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.08■□□□□ 0.81
SF3A1Q15459 AL121956.5-201ENST00000625261 221 ntBASIC20.08■□□□□ 0.81
SF3A1Q15459 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SF3A1Q15459 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SF3A1Q15459 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SF3A1Q15459 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.08■□□□□ 0.8
SF3A1Q15459 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
SF3A1Q15459 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC20.07■□□□□ 0.8
SF3A1Q15459 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.07■□□□□ 0.8
SF3A1Q15459 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms