Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
RNF4P78317 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
RNF4P78317 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
RNF4P78317 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
RNF4P78317 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF4P78317 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF4P78317 AL135999.2-201ENST00000622438 1686 ntBASIC16.09■□□□□ 0.17
RNF4P78317 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
RNF4P78317 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF4P78317 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.09■□□□□ 0.17
RNF4P78317 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.09■□□□□ 0.17
RNF4P78317 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF4P78317 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 AC012640.2-201ENST00000561606 901 ntBASIC16.09■□□□□ 0.17
RNF4P78317 AC006557.2-201ENST00000592985 1240 ntBASIC16.09■□□□□ 0.17
RNF4P78317 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF4P78317 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.09■□□□□ 0.17
RNF4P78317 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.09■□□□□ 0.17
RNF4P78317 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
RNF4P78317 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.09■□□□□ 0.17
RNF4P78317 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
RNF4P78317 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RNF4P78317 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RNF4P78317 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RNF4P78317 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC16.08■□□□□ 0.17
RNF4P78317 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
RNF4P78317 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RNF4P78317 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
RNF4P78317 AC020916.1-201ENST00000587762 1774 ntBASIC16.08■□□□□ 0.17
RNF4P78317 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.08■□□□□ 0.17
RNF4P78317 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.08■□□□□ 0.16
RNF4P78317 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.08■□□□□ 0.16
RNF4P78317 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 AC105339.3-201ENST00000560043 636 ntBASIC16.08■□□□□ 0.16
RNF4P78317 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.08■□□□□ 0.16
RNF4P78317 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.08■□□□□ 0.16
RNF4P78317 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
RNF4P78317 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
RNF4P78317 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.08■□□□□ 0.16
RNF4P78317 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC16.08■□□□□ 0.16
RNF4P78317 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
RNF4P78317 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
RNF4P78317 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.07■□□□□ 0.16
RNF4P78317 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
RNF4P78317 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC16.07■□□□□ 0.16
RNF4P78317 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
RNF4P78317 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
RNF4P78317 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms