Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 SCARNA2-201ENST00000458748 420 ntBASIC18.04■□□□□ 0.48
PTPN9P43378 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.04■□□□□ 0.48
PTPN9P43378 SART3-203ENST00000546611 1184 ntBASIC18.04■□□□□ 0.48
PTPN9P43378 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.04■□□□□ 0.48
PTPN9P43378 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.04■□□□□ 0.48
PTPN9P43378 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.04■□□□□ 0.48
PTPN9P43378 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.04■□□□□ 0.48
PTPN9P43378 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
PTPN9P43378 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PTPN9P43378 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PTPN9P43378 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
PTPN9P43378 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN9P43378 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC18.03■□□□□ 0.48
PTPN9P43378 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 LINC00982-205ENST00000420957 435 ntBASIC18.03■□□□□ 0.48
PTPN9P43378 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC18.03■□□□□ 0.48
PTPN9P43378 IRF8-202ENST00000562492 946 ntTSL 3 BASIC18.03■□□□□ 0.48
PTPN9P43378 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.03■□□□□ 0.48
PTPN9P43378 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
PTPN9P43378 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN9P43378 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PTPN9P43378 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
PTPN9P43378 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.03■□□□□ 0.48
PTPN9P43378 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PTPN9P43378 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PTPN9P43378 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC18.03■□□□□ 0.48
PTPN9P43378 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
PTPN9P43378 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PTPN9P43378 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.02■□□□□ 0.48
PTPN9P43378 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
PTPN9P43378 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.02■□□□□ 0.48
PTPN9P43378 NCF1C-201ENST00000438382 1427 ntBASIC18.02■□□□□ 0.48
PTPN9P43378 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
PTPN9P43378 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.02■□□□□ 0.48
PTPN9P43378 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.02■□□□□ 0.48
PTPN9P43378 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PTPN9P43378 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PTPN9P43378 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
PTPN9P43378 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.02■□□□□ 0.47
PTPN9P43378 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
PTPN9P43378 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.02■□□□□ 0.47
PTPN9P43378 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PTPN9P43378 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.47
PTPN9P43378 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms