Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HTTP42858 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HTTP42858 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.3■□□□□ 0.68
HTTP42858 DUTP2-201ENST00000519164 463 ntBASIC19.29■□□□□ 0.68
HTTP42858 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC19.29■□□□□ 0.68
HTTP42858 AC027369.6-201ENST00000525520 931 ntBASIC19.29■□□□□ 0.68
HTTP42858 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HTTP42858 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.29■□□□□ 0.68
HTTP42858 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.29■□□□□ 0.68
HTTP42858 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HTTP42858 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC19.29■□□□□ 0.68
HTTP42858 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
HTTP42858 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC19.29■□□□□ 0.68
HTTP42858 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 AL590560.3-201ENST00000623350 461 ntBASIC19.29■□□□□ 0.68
HTTP42858 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HTTP42858 INE1-201ENST00000456273 945 ntBASIC19.29■□□□□ 0.68
HTTP42858 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC19.29■□□□□ 0.68
HTTP42858 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HTTP42858 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.29■□□□□ 0.68
HTTP42858 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 LY6E-204ENST00000519546 971 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 AC092552.1-201ENST00000547243 906 ntBASIC19.28■□□□□ 0.68
HTTP42858 GPR182-203ENST00000622922 591 ntBASIC19.28■□□□□ 0.68
HTTP42858 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.28■□□□□ 0.68
HTTP42858 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HTTP42858 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC19.28■□□□□ 0.68
HTTP42858 REEP4-207ENST00000523293 913 ntTSL 3 BASIC19.28■□□□□ 0.68
HTTP42858 PACS1-203ENST00000524815 628 ntTSL 4 BASIC19.28■□□□□ 0.68
HTTP42858 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 ARL16-202ENST00000570561 768 ntTSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC19.28■□□□□ 0.68
HTTP42858 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.28■□□□□ 0.68
HTTP42858 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HTTP42858 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HTTP42858 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.27■□□□□ 0.68
HTTP42858 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC19.27■□□□□ 0.68
HTTP42858 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.27■□□□□ 0.68
HTTP42858 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC19.27■□□□□ 0.68
HTTP42858 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC19.27■□□□□ 0.68
HTTP42858 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HTTP42858 TEX28P1-201ENST00000613479 1221 ntBASIC19.27■□□□□ 0.68
HTTP42858 TEX28P2-201ENST00000617764 1221 ntBASIC19.27■□□□□ 0.68
HTTP42858 AC004840.1-201ENST00000636359 365 ntBASIC19.27■□□□□ 0.68
HTTP42858 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.27■□□□□ 0.68
HTTP42858 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
HTTP42858 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HTTP42858 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
HTTP42858 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.27■□□□□ 0.67
HTTP42858 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.27■□□□□ 0.67
HTTP42858 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
HTTP42858 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HTTP42858 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC19.27■□□□□ 0.67
HTTP42858 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC19.27■□□□□ 0.67
HTTP42858 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
HTTP42858 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.27■□□□□ 0.67
HTTP42858 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HTTP42858 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HTTP42858 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HTTP42858 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HTTP42858 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC19.26■□□□□ 0.67
HTTP42858 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms