Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 AP005242.2-201ENST00000580065 1175 ntBASIC16.63■□□□□ 0.25
MSX2P35548 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
MSX2P35548 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.63■□□□□ 0.25
MSX2P35548 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
MSX2P35548 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 AL135905.2-201ENST00000584934 1404 ntBASIC16.62■□□□□ 0.25
MSX2P35548 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
MSX2P35548 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
MSX2P35548 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.62■□□□□ 0.25
MSX2P35548 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.62■□□□□ 0.25
MSX2P35548 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.62■□□□□ 0.25
MSX2P35548 AC007663.1-201ENST00000438948 1240 ntBASIC16.62■□□□□ 0.25
MSX2P35548 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.62■□□□□ 0.25
MSX2P35548 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 BX088651.1-201ENST00000540551 451 ntBASIC16.62■□□□□ 0.25
MSX2P35548 MIR4651-201ENST00000582622 73 ntBASIC16.62■□□□□ 0.25
MSX2P35548 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC16.62■□□□□ 0.25
MSX2P35548 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.62■□□□□ 0.25
MSX2P35548 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.62■□□□□ 0.25
MSX2P35548 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
MSX2P35548 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
MSX2P35548 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
MSX2P35548 AC093525.9-201ENST00000624961 1746 ntBASIC16.62■□□□□ 0.25
MSX2P35548 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.61■□□□□ 0.25
MSX2P35548 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC16.61■□□□□ 0.25
MSX2P35548 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.61■□□□□ 0.25
MSX2P35548 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.61■□□□□ 0.25
MSX2P35548 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
MSX2P35548 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 PHB2-202ENST00000440277 996 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
MSX2P35548 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms