Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.69■□□□□ 0.1
SPTA1P02549 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.69■□□□□ 0.1
SPTA1P02549 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC15.69■□□□□ 0.1
SPTA1P02549 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 AC093010.1-201ENST00000473625 1624 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 PHGDH-209ENST00000641074 1780 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.69■□□□□ 0.1
SPTA1P02549 ELK2AP-201ENST00000392510 1007 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 COX5BP8-201ENST00000416911 349 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 ACTG1P4-201ENST00000425123 1122 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 ACA64.2-201ENST00000459014 129 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.69■□□□□ 0.1
SPTA1P02549 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 AC009949.1-201ENST00000623048 1830 ntBASIC15.69■□□□□ 0.1
SPTA1P02549 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
SPTA1P02549 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SPTA1P02549 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SPTA1P02549 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
SPTA1P02549 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 AC009336.1-201ENST00000608941 1553 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC15.68■□□□□ 0.1
SPTA1P02549 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.68■□□□□ 0.1
SPTA1P02549 TUBB3P1-201ENST00000405796 1332 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SPTA1P02549 AL355306.1-201ENST00000415580 579 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 HCG4-201ENST00000418983 998 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.68■□□□□ 0.1
SPTA1P02549 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.68■□□□□ 0.1
SPTA1P02549 AC019129.2-201ENST00000609837 1235 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SPTA1P02549 FZD10-202ENST00000539839 3282 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.68■□□□□ 0.1
SPTA1P02549 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.68■□□□□ 0.1
SPTA1P02549 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC15.68■□□□□ 0.1
SPTA1P02549 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 AC109462.3-201ENST00000573934 613 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.68■□□□□ 0.1
SPTA1P02549 STK25P1-201ENST00000585406 838 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC15.68■□□□□ 0.1
SPTA1P02549 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC15.68■□□□□ 0.1
SPTA1P02549 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SPTA1P02549 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SPTA1P02549 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC15.67■□□□□ 0.1
SPTA1P02549 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC15.67■□□□□ 0.1
SPTA1P02549 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC15.67■□□□□ 0.1
SPTA1P02549 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.67■□□□□ 0.1
SPTA1P02549 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC15.67■□□□□ 0.1
SPTA1P02549 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC15.67■□□□□ 0.1
SPTA1P02549 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.67■□□□□ 0.1
SPTA1P02549 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.67■□□□□ 0.1
SPTA1P02549 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC15.67■□□□□ 0.1
SPTA1P02549 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SPTA1P02549 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SPTA1P02549 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SPTA1P02549 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.67■□□□□ 0.1
SPTA1P02549 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SPTA1P02549 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms