Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
ABCA1O95477 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.58□□□□□ -0.08
ABCA1O95477 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
ABCA1O95477 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
ABCA1O95477 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.58□□□□□ -0.08
ABCA1O95477 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.58□□□□□ -0.08
ABCA1O95477 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC14.58□□□□□ -0.08
ABCA1O95477 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
ABCA1O95477 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
ABCA1O95477 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
ABCA1O95477 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.58□□□□□ -0.08
ABCA1O95477 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.58□□□□□ -0.08
ABCA1O95477 KRT8P47-201ENST00000604727 1398 ntBASIC14.58□□□□□ -0.08
ABCA1O95477 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.58□□□□□ -0.08
ABCA1O95477 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 AC090164.3-201ENST00000610780 2143 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
ABCA1O95477 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 MIR770-201ENST00000390219 98 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 ELK2BP-201ENST00000415014 1224 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
ABCA1O95477 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 AC073592.3-201ENST00000625118 1834 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 AC148477.5-201ENST00000625164 1645 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
ABCA1O95477 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 AJ011932.1-201ENST00000621707 465 ntBASIC14.57□□□□□ -0.08
ABCA1O95477 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
ABCA1O95477 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC14.57□□□□□ -0.08
ABCA1O95477 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC14.56□□□□□ -0.08
ABCA1O95477 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ABCA1O95477 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.56□□□□□ -0.08
ABCA1O95477 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 AC067852.2-201ENST00000590513 2313 ntBASIC14.56□□□□□ -0.08
ABCA1O95477 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
ABCA1O95477 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC14.56□□□□□ -0.08
ABCA1O95477 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.56□□□□□ -0.08
ABCA1O95477 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
ABCA1O95477 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC14.56□□□□□ -0.08
ABCA1O95477 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 AL513190.1-201ENST00000621254 727 ntBASIC14.56□□□□□ -0.08
ABCA1O95477 AC093028.1-201ENST00000622998 982 ntBASIC14.56□□□□□ -0.08
ABCA1O95477 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC14.56□□□□□ -0.08
ABCA1O95477 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
ABCA1O95477 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
ABCA1O95477 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms