Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.34■□□□□ 0.53
RTN3O95197 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.34■□□□□ 0.53
RTN3O95197 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.34■□□□□ 0.53
RTN3O95197 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC18.34■□□□□ 0.53
RTN3O95197 AP000347.1-202ENST00000435868 847 ntBASIC18.34■□□□□ 0.53
RTN3O95197 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.34■□□□□ 0.53
RTN3O95197 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.34■□□□□ 0.53
RTN3O95197 AC012640.2-201ENST00000561606 901 ntBASIC18.34■□□□□ 0.53
RTN3O95197 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTN3O95197 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTN3O95197 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTN3O95197 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RTN3O95197 AC006116.8-202ENST00000587620 1550 ntBASIC18.34■□□□□ 0.53
RTN3O95197 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RTN3O95197 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RTN3O95197 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTN3O95197 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
RTN3O95197 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.33■□□□□ 0.53
RTN3O95197 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RTN3O95197 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.33■□□□□ 0.53
RTN3O95197 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RTN3O95197 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 AC092910.1-201ENST00000482027 1129 ntBASIC18.33■□□□□ 0.52
RTN3O95197 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC18.33■□□□□ 0.52
RTN3O95197 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC18.33■□□□□ 0.52
RTN3O95197 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.33■□□□□ 0.52
RTN3O95197 MIR1199-201ENST00000621445 119 ntBASIC18.33■□□□□ 0.52
RTN3O95197 NME4-212ENST00000621774 904 ntTSL 3 BASIC18.33■□□□□ 0.52
RTN3O95197 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.33■□□□□ 0.52
RTN3O95197 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.33■□□□□ 0.52
RTN3O95197 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.33■□□□□ 0.52
RTN3O95197 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.33■□□□□ 0.52
RTN3O95197 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
RTN3O95197 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTN3O95197 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 AC084018.2-201ENST00000613093 2607 ntBASIC18.32■□□□□ 0.52
RTN3O95197 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.32■□□□□ 0.52
RTN3O95197 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.32■□□□□ 0.52
RTN3O95197 IGHV3-22-201ENST00000520721 359 ntBASIC18.32■□□□□ 0.52
RTN3O95197 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.32■□□□□ 0.52
RTN3O95197 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.32■□□□□ 0.52
RTN3O95197 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.32■□□□□ 0.52
RTN3O95197 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 PGM5P2-202ENST00000637225 1043 ntBASIC18.32■□□□□ 0.52
RTN3O95197 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
RTN3O95197 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTN3O95197 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RTN3O95197 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
RTN3O95197 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
RTN3O95197 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RTN3O95197 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.31■□□□□ 0.52
RTN3O95197 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.31■□□□□ 0.52
RTN3O95197 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.31■□□□□ 0.52
RTN3O95197 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC18.31■□□□□ 0.52
RTN3O95197 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
RTN3O95197 AMT-250ENST00000637682 1823 ntTSL 5 BASIC18.31■□□□□ 0.52
RTN3O95197 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RTN3O95197 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RTN3O95197 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
RTN3O95197 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RTN3O95197 ENSA-206ENST00000361631 725 ntTSL 2 BASIC18.31■□□□□ 0.52
RTN3O95197 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
RTN3O95197 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.31■□□□□ 0.52
RTN3O95197 KRT18P27-201ENST00000427733 1299 ntBASIC18.31■□□□□ 0.52
RTN3O95197 AC098831.1-202ENST00000438821 336 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms