Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VPS4BO75351 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
VPS4BO75351 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.08■□□□□ 0.32
VPS4BO75351 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS4BO75351 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS4BO75351 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VPS4BO75351 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS4BO75351 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS4BO75351 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS4BO75351 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS4BO75351 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS4BO75351 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS4BO75351 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.07■□□□□ 0.32
VPS4BO75351 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS4BO75351 AC104692.2-201ENST00000603054 253 ntBASIC17.07■□□□□ 0.32
VPS4BO75351 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS4BO75351 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS4BO75351 AC117500.6-201ENST00000624871 588 ntBASIC17.07■□□□□ 0.32
VPS4BO75351 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS4BO75351 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS4BO75351 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.07■□□□□ 0.32
VPS4BO75351 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS4BO75351 LYSMD4-203ENST00000378904 2122 ntBASIC17.06■□□□□ 0.32
VPS4BO75351 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS4BO75351 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS4BO75351 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS4BO75351 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS4BO75351 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS4BO75351 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 DDT-203ENST00000403754 569 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS4BO75351 TSPY12P-201ENST00000421279 868 ntBASIC17.06■□□□□ 0.32
VPS4BO75351 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 DDT-206ENST00000430101 573 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4BO75351 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS4BO75351 LINC00265-3P-201ENST00000447588 903 ntBASIC17.06■□□□□ 0.32
VPS4BO75351 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS4BO75351 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
VPS4BO75351 AC112698.1-201ENST00000510299 916 ntBASIC17.06■□□□□ 0.32
VPS4BO75351 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4BO75351 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS4BO75351 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4BO75351 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS4BO75351 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS4BO75351 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS4BO75351 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS4BO75351 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4BO75351 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
VPS4BO75351 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS4BO75351 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
VPS4BO75351 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
VPS4BO75351 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 AC079781.3-201ENST00000449110 356 ntBASIC17.05■□□□□ 0.32
VPS4BO75351 FOSL1P1-201ENST00000511041 816 ntBASIC17.05■□□□□ 0.32
VPS4BO75351 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS4BO75351 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS4BO75351 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS4BO75351 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS4BO75351 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms