Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.83□□□□□ -0.04
SDCBPO00560 RNF152P1-201ENST00000397754 604 ntBASIC14.83□□□□□ -0.04
SDCBPO00560 KRT18P48-201ENST00000434763 852 ntBASIC14.83□□□□□ -0.04
SDCBPO00560 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 AC092647.4-201ENST00000457211 535 ntBASIC14.83□□□□□ -0.04
SDCBPO00560 SNX5-210ENST00000481323 562 ntTSL 3 BASIC14.83□□□□□ -0.04
SDCBPO00560 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC14.83□□□□□ -0.04
SDCBPO00560 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.83□□□□□ -0.04
SDCBPO00560 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
SDCBPO00560 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
SDCBPO00560 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
SDCBPO00560 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
SDCBPO00560 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 AK4P3-201ENST00000418260 669 ntBASIC14.82□□□□□ -0.04
SDCBPO00560 TSPY5P-201ENST00000426936 936 ntBASIC14.82□□□□□ -0.04
SDCBPO00560 DDX43P3-201ENST00000441064 443 ntBASIC14.82□□□□□ -0.04
SDCBPO00560 HOMER2P1-201ENST00000455653 964 ntBASIC14.82□□□□□ -0.04
SDCBPO00560 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.82□□□□□ -0.04
SDCBPO00560 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC14.82□□□□□ -0.04
SDCBPO00560 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC14.82□□□□□ -0.04
SDCBPO00560 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.82□□□□□ -0.04
SDCBPO00560 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC14.82□□□□□ -0.04
SDCBPO00560 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
SDCBPO00560 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
SDCBPO00560 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 AL359075.1-203ENST00000462729 1002 ntBASIC14.81□□□□□ -0.04
SDCBPO00560 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 PPOX-219ENST00000544598 813 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 ZNF444P1-201ENST00000559497 298 ntBASIC14.81□□□□□ -0.04
SDCBPO00560 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC14.81□□□□□ -0.04
SDCBPO00560 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
SDCBPO00560 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
SDCBPO00560 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC14.81□□□□□ -0.04
SDCBPO00560 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
SDCBPO00560 AC005915.1-201ENST00000624912 2018 ntBASIC14.81□□□□□ -0.04
SDCBPO00560 KRT8P47-201ENST00000604727 1398 ntBASIC14.81□□□□□ -0.04
SDCBPO00560 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms