Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 COX10-202ENST00000429152 875 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 MTDHP3-201ENST00000594186 672 ntBASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 AL139327.4-201ENST00000612362 153 ntBASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 AC116407.3-201ENST00000623905 1129 ntBASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 TP73-AS1-210ENST00000637775 1455 ntBASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PCDHB1Q9Y5F3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 ZNF259P1-201ENST00000407656 1365 ntBASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 LYSMD4-203ENST00000378904 2122 ntBASIC17.41■□□□□ 0.38
PCDHB1Q9Y5F3 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 PP12613-201ENST00000424958 2230 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AC016396.2-201ENST00000562575 1417 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AC011467.2-201ENST00000598425 242 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AP001269.4-201ENST00000609611 512 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AC019129.2-201ENST00000609837 1235 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 SIRPAP1-201ENST00000448467 1770 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 AC141586.5-201ENST00000624546 2050 ntBASIC17.4■□□□□ 0.38
PCDHB1Q9Y5F3 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHB1Q9Y5F3 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHB1Q9Y5F3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
PCDHB1Q9Y5F3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms