Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 PCDH8P1-201ENST00000428983 2773 ntBASIC15.04■□□□□ -0
CHMP1AQ9HD42 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 AL138688.1-201ENST00000624851 1594 ntBASIC15.04■□□□□ -0
CHMP1AQ9HD42 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 SNX21-213ENST00000614929 587 ntTSL 5 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.04■□□□□ -0
CHMP1AQ9HD42 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
CHMP1AQ9HD42 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
CHMP1AQ9HD42 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.03■□□□□ -0
CHMP1AQ9HD42 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 HMGA1P5-201ENST00000412453 271 ntBASIC15.03■□□□□ -0
CHMP1AQ9HD42 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 NT5C-210ENST00000582160 860 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
CHMP1AQ9HD42 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC15.03■□□□□ -0
CHMP1AQ9HD42 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms