Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 HTR7P1-202ENST00000624664 4411 ntBASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ACTG1P4-201ENST00000425123 1122 ntBASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 AC124947.2-201ENST00000547118 1133 ntBASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 AC060834.1-201ENST00000443027 2032 ntBASIC19.46■□□□□ 0.71
CCSER1Q9C0I3 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 PRYP5-201ENST00000451909 266 ntBASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 KRT18P31-201ENST00000506277 1292 ntBASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 TOLLIP-AS1-201ENST00000530897 939 ntBASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 AL121772.3-201ENST00000610840 674 ntBASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCSER1Q9C0I3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 CLEC4GP1-201ENST00000596555 870 ntBASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AL732292.2-201ENST00000609649 430 ntBASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AC092053.1-201ENST00000605787 1936 ntBASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AD000864.1-201ENST00000624076 2295 ntBASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCSER1Q9C0I3 AC004817.3-201ENST00000602957 2129 ntBASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 RBM17P3-201ENST00000417687 1192 ntBASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 DUSP5P1-201ENST00000441325 1139 ntBASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 TBCB-205ENST00000585746 875 ntTSL 3 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.43■□□□□ 0.7
CCSER1Q9C0I3 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms