Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.97■□□□□ 0.47
CDX2Q99626 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC17.97■□□□□ 0.47
CDX2Q99626 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.97■□□□□ 0.47
CDX2Q99626 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDX2Q99626 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 SPDYE19P-201ENST00000338590 713 ntBASIC17.96■□□□□ 0.47
CDX2Q99626 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.96■□□□□ 0.47
CDX2Q99626 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.96■□□□□ 0.47
CDX2Q99626 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 AL138918.1-201ENST00000568306 659 ntBASIC17.96■□□□□ 0.47
CDX2Q99626 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 AC244093.1-201ENST00000610837 814 ntBASIC17.96■□□□□ 0.47
CDX2Q99626 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC17.96■□□□□ 0.47
CDX2Q99626 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
CDX2Q99626 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.96■□□□□ 0.47
CDX2Q99626 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDX2Q99626 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.96■□□□□ 0.47
CDX2Q99626 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC17.96■□□□□ 0.46
CDX2Q99626 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.96■□□□□ 0.46
CDX2Q99626 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
CDX2Q99626 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.95■□□□□ 0.46
CDX2Q99626 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
CDX2Q99626 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CDX2Q99626 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
CDX2Q99626 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.95■□□□□ 0.46
CDX2Q99626 AC093004.1-201ENST00000508850 424 ntBASIC17.95■□□□□ 0.46
CDX2Q99626 AC005412.3-201ENST00000580309 715 ntBASIC17.95■□□□□ 0.46
CDX2Q99626 RN7SL190P-201ENST00000582519 257 ntBASIC17.95■□□□□ 0.46
CDX2Q99626 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CDX2Q99626 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDX2Q99626 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.94■□□□□ 0.46
CDX2Q99626 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
CDX2Q99626 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC17.94■□□□□ 0.46
CDX2Q99626 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX2Q99626 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CDX2Q99626 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX2Q99626 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX2Q99626 MFF-223ENST00000524634 647 ntTSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.94■□□□□ 0.46
CDX2Q99626 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CDX2Q99626 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
CDX2Q99626 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CDX2Q99626 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms