Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC009078.2-202ENST00000463353 338 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AF186996.4-201ENST00000467186 377 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 BX005266.1-201ENST00000473402 457 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AC073648.2-201ENST00000510116 352 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 STK25P1-201ENST00000585406 838 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AC064862.7-201ENST00000604520 867 ntBASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD1Q96NR3 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SPDYE21P-201ENST00000413323 827 ntBASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 RNPS1P1-201ENST00000507437 918 ntBASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 HLA-J-201ENST00000462773 1622 ntBASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
PTCHD1Q96NR3 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 AC004817.3-201ENST00000602957 2129 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 KRT18P67-201ENST00000432816 1264 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 AL662844.1-201ENST00000546340 181 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 AC021087.4-201ENST00000563761 564 ntBASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD1Q96NR3 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms