Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 AC008687.5-201ENST00000593746 558 ntBASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
DEPDC4Q8N2C3 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 AC091076.1-201ENST00000610741 619 ntBASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 AC105020.1-201ENST00000435356 2205 ntBASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 AC016396.2-201ENST00000562575 1417 ntBASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 PKD1P5-201ENST00000532415 10291 ntBASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
DEPDC4Q8N2C3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 PCDHB19P-201ENST00000570871 2371 ntBASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AGGF1P2-201ENST00000426656 2106 ntBASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AL359075.1-203ENST00000462729 1002 ntBASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AL441883.1-201ENST00000566170 1045 ntBASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.23■□□□□ 0.19
DEPDC4Q8N2C3 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms