Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
CCDC65Q8IXS2 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CCDC65Q8IXS2 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 AC020916.1-201ENST00000587762 1774 ntBASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CCDC65Q8IXS2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 SOD2-201ENST00000337404 991 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ABCD1P5-201ENST00000445663 754 ntBASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CCDC65Q8IXS2 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 AC106820.2-201ENST00000563775 3264 ntBASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 AP001094.4-201ENST00000579008 2176 ntBASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CCDC65Q8IXS2 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC19.3■□□□□ 0.68
CCDC65Q8IXS2 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms