Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 POM121L3P-201ENST00000419331 1163 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AC103564.2-201ENST00000432853 1299 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 IGHV3-52-201ENST00000519770 353 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AC011467.2-201ENST00000598425 242 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AL591684.3-201ENST00000605187 298 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AC114341.1-201ENST00000618070 349 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 TP73-AS1-210ENST00000637775 1455 ntBASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTCHD3Q3KNS1 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 MIR5100-201ENST00000579544 119 ntBASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 AL121912.1-201ENST00000603683 238 ntBASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 REXO1L6P-202ENST00000619970 1078 ntBASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
PTCHD3Q3KNS1 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 MYCLP1-201ENST00000372451 1075 ntBASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 RCN1P2-201ENST00000398357 915 ntBASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 SAPCD2P3-201ENST00000455031 850 ntBASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 AF238378.1-201ENST00000526806 358 ntBASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 AP002469.2-201ENST00000531724 424 ntBASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PTCHD3Q3KNS1 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PTCHD3Q3KNS1 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PTCHD3Q3KNS1 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms