Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
LIMK1P53667 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMK1P53667 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.16■□□□□ 0.34
LIMK1P53667 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LIMK1P53667 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.16■□□□□ 0.34
LIMK1P53667 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.16■□□□□ 0.34
LIMK1P53667 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.16■□□□□ 0.34
LIMK1P53667 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.16■□□□□ 0.34
LIMK1P53667 YTHDF3-AS1-201ENST00000603538 718 ntBASIC17.16■□□□□ 0.34
LIMK1P53667 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.16■□□□□ 0.34
LIMK1P53667 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LIMK1P53667 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LIMK1P53667 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LIMK1P53667 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
LIMK1P53667 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LIMK1P53667 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.15■□□□□ 0.34
LIMK1P53667 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 AC010460.3-201ENST00000511359 1579 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.15■□□□□ 0.34
LIMK1P53667 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 PRORSD1P-202ENST00000563365 2154 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 BASP1P1-201ENST00000430708 665 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 AC002472.2-201ENST00000442739 958 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.15■□□□□ 0.34
LIMK1P53667 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC17.15■□□□□ 0.34
LIMK1P53667 AC068137.2-201ENST00000605408 478 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 AC009093.7-201ENST00000623853 1223 ntBASIC17.15■□□□□ 0.34
LIMK1P53667 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
LIMK1P53667 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.15■□□□□ 0.34
LIMK1P53667 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.15■□□□□ 0.34
LIMK1P53667 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
LIMK1P53667 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
LIMK1P53667 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMK1P53667 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
LIMK1P53667 AL353593.2-201ENST00000602529 1483 ntBASIC17.14■□□□□ 0.33
LIMK1P53667 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.14■□□□□ 0.33
LIMK1P53667 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.14■□□□□ 0.33
LIMK1P53667 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.14■□□□□ 0.33
LIMK1P53667 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMK1P53667 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMK1P53667 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMK1P53667 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC17.14■□□□□ 0.33
LIMK1P53667 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms