Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 AC125807.1-201ENST00000483097 614 ntBASIC18.47■□□□□ 0.55
COL4A4P53420 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 TMED1-207ENST00000591695 809 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 AC026120.1-201ENST00000611536 926 ntBASIC18.47■□□□□ 0.55
COL4A4P53420 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A4P53420 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
COL4A4P53420 WRB-204ENST00000398753 699 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A4P53420 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A4P53420 TREML5P-201ENST00000421694 576 ntBASIC18.46■□□□□ 0.55
COL4A4P53420 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.46■□□□□ 0.55
COL4A4P53420 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
COL4A4P53420 SLC25A39P2-201ENST00000537614 270 ntBASIC18.46■□□□□ 0.55
COL4A4P53420 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A4P53420 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.46■□□□□ 0.55
COL4A4P53420 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
COL4A4P53420 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.54
COL4A4P53420 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 LINC00982-205ENST00000420957 435 ntBASIC18.45■□□□□ 0.54
COL4A4P53420 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 AC140658.5-201ENST00000438532 169 ntBASIC18.45■□□□□ 0.54
COL4A4P53420 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 RNA5SP421-201ENST00000516864 134 ntBASIC18.45■□□□□ 0.54
COL4A4P53420 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.45■□□□□ 0.54
COL4A4P53420 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A4P53420 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC18.45■□□□□ 0.54
COL4A4P53420 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.45■□□□□ 0.54
COL4A4P53420 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
COL4A4P53420 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A4P53420 HNRNPFP1-201ENST00000391730 1133 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 TFAMP1-201ENST00000412727 736 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A4P53420 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 AC069335.1-201ENST00000489972 472 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL4A4P53420 AC063926.2-201ENST00000623766 1308 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
COL4A4P53420 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
COL4A4P53420 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC18.44■□□□□ 0.54
COL4A4P53420 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 AC107890.1-201ENST00000422478 521 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.44■□□□□ 0.54
COL4A4P53420 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.44■□□□□ 0.54
COL4A4P53420 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC18.44■□□□□ 0.54
COL4A4P53420 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.44■□□□□ 0.54
COL4A4P53420 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.44■□□□□ 0.54
COL4A4P53420 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
COL4A4P53420 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.44■□□□□ 0.54
COL4A4P53420 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL4A4P53420 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
COL4A4P53420 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.43■□□□□ 0.54
COL4A4P53420 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms