Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL12P48061 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.21■□□□□ 0.35
CXCL12P48061 UXT-AS1-201ENST00000590504 1525 ntBASIC17.21■□□□□ 0.35
CXCL12P48061 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CXCL12P48061 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CXCL12P48061 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL12P48061 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.21■□□□□ 0.35
CXCL12P48061 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.21■□□□□ 0.35
CXCL12P48061 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC17.21■□□□□ 0.35
CXCL12P48061 KRT8P23-201ENST00000560090 1207 ntBASIC17.21■□□□□ 0.35
CXCL12P48061 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.21■□□□□ 0.35
CXCL12P48061 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.21■□□□□ 0.35
CXCL12P48061 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC17.21■□□□□ 0.35
CXCL12P48061 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CXCL12P48061 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CXCL12P48061 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CXCL12P48061 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.21■□□□□ 0.34
CXCL12P48061 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.21■□□□□ 0.34
CXCL12P48061 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CXCL12P48061 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CXCL12P48061 AC008677.1-201ENST00000519230 1561 ntBASIC17.2■□□□□ 0.34
CXCL12P48061 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.2■□□□□ 0.34
CXCL12P48061 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
CXCL12P48061 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CXCL12P48061 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.2■□□□□ 0.34
CXCL12P48061 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 AC026150.2-201ENST00000564693 1156 ntBASIC17.2■□□□□ 0.34
CXCL12P48061 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.2■□□□□ 0.34
CXCL12P48061 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.2■□□□□ 0.34
CXCL12P48061 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.2■□□□□ 0.34
CXCL12P48061 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 AC135776.1-201ENST00000319817 2481 ntBASIC17.2■□□□□ 0.34
CXCL12P48061 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CXCL12P48061 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CXCL12P48061 AC073130.3-201ENST00000624389 2278 ntBASIC17.19■□□□□ 0.34
CXCL12P48061 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CXCL12P48061 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 AC107918.2-201ENST00000530817 355 ntBASIC17.19■□□□□ 0.34
CXCL12P48061 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 INO80E-210ENST00000567705 880 ntTSL 3 BASIC17.19■□□□□ 0.34
CXCL12P48061 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 HFE2-206ENST00000634927 506 ntTSL 4 BASIC17.19■□□□□ 0.34
CXCL12P48061 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
CXCL12P48061 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 CROCCP3-202ENST00000420820 1947 ntBASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms