Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NEDD4P46934 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 AP002414.3-201ENST00000589352 1468 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
NEDD4P46934 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.46■□□□□ 0.87
NEDD4P46934 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NEDD4P46934 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NEDD4P46934 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.46■□□□□ 0.87
NEDD4P46934 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.46■□□□□ 0.87
NEDD4P46934 AC139887.3-201ENST00000568585 713 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 AP001005.1-201ENST00000571755 1248 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 AL353135.1-201ENST00000606729 504 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 AL139424.1-201ENST00000607572 797 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 AC008735.5-201ENST00000623544 497 ntBASIC20.46■□□□□ 0.87
NEDD4P46934 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
NEDD4P46934 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC20.46■□□□□ 0.87
NEDD4P46934 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
NEDD4P46934 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
NEDD4P46934 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC20.45■□□□□ 0.86
NEDD4P46934 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
NEDD4P46934 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
NEDD4P46934 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.45■□□□□ 0.86
NEDD4P46934 AC073621.1-201ENST00000392730 636 ntBASIC20.45■□□□□ 0.86
NEDD4P46934 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.45■□□□□ 0.86
NEDD4P46934 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.45■□□□□ 0.86
NEDD4P46934 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
NEDD4P46934 AC006504.4-201ENST00000592118 1568 ntBASIC20.45■□□□□ 0.86
NEDD4P46934 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
NEDD4P46934 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.45■□□□□ 0.86
NEDD4P46934 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
NEDD4P46934 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
NEDD4P46934 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC20.44■□□□□ 0.86
NEDD4P46934 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC20.44■□□□□ 0.86
NEDD4P46934 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.44■□□□□ 0.86
NEDD4P46934 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.44■□□□□ 0.86
NEDD4P46934 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC20.44■□□□□ 0.86
NEDD4P46934 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.44■□□□□ 0.86
NEDD4P46934 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
NEDD4P46934 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.44■□□□□ 0.86
NEDD4P46934 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
NEDD4P46934 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.44■□□□□ 0.86
NEDD4P46934 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
NEDD4P46934 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
NEDD4P46934 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC20.43■□□□□ 0.86
NEDD4P46934 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
NEDD4P46934 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms