Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CIITAP33076 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
CIITAP33076 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.55■□□□□ 0.72
CIITAP33076 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC19.55■□□□□ 0.72
CIITAP33076 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CIITAP33076 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 PP12613-201ENST00000424958 2230 ntBASIC19.55■□□□□ 0.72
CIITAP33076 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.55■□□□□ 0.72
CIITAP33076 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.55■□□□□ 0.72
CIITAP33076 AP002414.1-201ENST00000391405 1147 ntBASIC19.55■□□□□ 0.72
CIITAP33076 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 RPS15P9-201ENST00000494093 319 ntBASIC19.55■□□□□ 0.72
CIITAP33076 RNA5SP415-201ENST00000517246 115 ntBASIC19.55■□□□□ 0.72
CIITAP33076 IGHV3-65-201ENST00000523210 341 ntBASIC19.55■□□□□ 0.72
CIITAP33076 UNC93B6-202ENST00000528242 690 ntBASIC19.55■□□□□ 0.72
CIITAP33076 SLC25A1P1-201ENST00000528351 927 ntBASIC19.55■□□□□ 0.72
CIITAP33076 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC19.55■□□□□ 0.72
CIITAP33076 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 AC008667.4-201ENST00000607370 168 ntBASIC19.55■□□□□ 0.72
CIITAP33076 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CIITAP33076 AC005593.1-201ENST00000624894 515 ntBASIC19.55■□□□□ 0.72
CIITAP33076 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CIITAP33076 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CIITAP33076 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CIITAP33076 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CIITAP33076 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.55■□□□□ 0.72
CIITAP33076 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CIITAP33076 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CIITAP33076 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.54■□□□□ 0.72
CIITAP33076 AP000347.1-202ENST00000435868 847 ntBASIC19.54■□□□□ 0.72
CIITAP33076 RPL13AP23-201ENST00000480739 586 ntBASIC19.54■□□□□ 0.72
CIITAP33076 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.54■□□□□ 0.72
CIITAP33076 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
CIITAP33076 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CIITAP33076 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CIITAP33076 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.54■□□□□ 0.72
CIITAP33076 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.53■□□□□ 0.72
CIITAP33076 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 CROCCP2-202ENST00000412962 2773 ntBASIC19.53■□□□□ 0.72
CIITAP33076 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC19.53■□□□□ 0.72
CIITAP33076 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
CIITAP33076 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 AC106730.1-201ENST00000566722 1090 ntBASIC19.53■□□□□ 0.72
CIITAP33076 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CIITAP33076 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.53■□□□□ 0.72
CIITAP33076 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CIITAP33076 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CIITAP33076 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
CIITAP33076 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CIITAP33076 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CIITAP33076 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
CIITAP33076 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.52■□□□□ 0.72
CIITAP33076 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CIITAP33076 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.52■□□□□ 0.72
CIITAP33076 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CIITAP33076 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms