Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PTPN4P29074 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PTPN4P29074 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 AC016734.2-201ENST00000624325 1377 ntBASIC17.53■□□□□ 0.4
PTPN4P29074 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.52■□□□□ 0.4
PTPN4P29074 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC17.52■□□□□ 0.4
PTPN4P29074 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 KRT18P23-201ENST00000435622 1283 ntBASIC17.52■□□□□ 0.4
PTPN4P29074 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.52■□□□□ 0.4
PTPN4P29074 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 AL136038.4-201ENST00000603606 1261 ntBASIC17.52■□□□□ 0.4
PTPN4P29074 AC012313.10-201ENST00000623509 926 ntBASIC17.52■□□□□ 0.4
PTPN4P29074 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.52■□□□□ 0.4
PTPN4P29074 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PTPN4P29074 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.52■□□□□ 0.4
PTPN4P29074 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN4P29074 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
PTPN4P29074 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN4P29074 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN4P29074 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN4P29074 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.52■□□□□ 0.39
PTPN4P29074 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 AL391807.1-203ENST00000604392 2365 ntBASIC17.51■□□□□ 0.39
PTPN4P29074 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.51■□□□□ 0.39
PTPN4P29074 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.51■□□□□ 0.39
PTPN4P29074 KRT8P26-201ENST00000534154 1276 ntBASIC17.51■□□□□ 0.39
PTPN4P29074 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 NAA38-203ENST00000575071 553 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.51■□□□□ 0.39
PTPN4P29074 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.51■□□□□ 0.39
PTPN4P29074 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.51■□□□□ 0.39
PTPN4P29074 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC17.51■□□□□ 0.39
PTPN4P29074 PCDHA1-201ENST00000378133 2726 ntBASIC17.51■□□□□ 0.39
PTPN4P29074 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
PTPN4P29074 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PTPN4P29074 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.5■□□□□ 0.39
PTPN4P29074 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 MIR662-201ENST00000384847 95 ntBASIC17.5■□□□□ 0.39
PTPN4P29074 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PTPN4P29074 AC026396.1-201ENST00000419388 421 ntBASIC17.5■□□□□ 0.39
PTPN4P29074 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.5■□□□□ 0.39
PTPN4P29074 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.5■□□□□ 0.39
PTPN4P29074 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.5■□□□□ 0.39
PTPN4P29074 PRELID1P1-202ENST00000567272 903 ntBASIC17.5■□□□□ 0.39
PTPN4P29074 PRR29-207ENST00000580752 458 ntTSL 3 BASIC17.5■□□□□ 0.39
PTPN4P29074 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PTPN4P29074 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms