Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SMARCA1P28370 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
SMARCA1P28370 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SMARCA1P28370 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SMARCA1P28370 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.78
SMARCA1P28370 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
SMARCA1P28370 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
SMARCA1P28370 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SMARCA1P28370 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
SMARCA1P28370 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.89■□□□□ 0.77
SMARCA1P28370 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.89■□□□□ 0.77
SMARCA1P28370 SLC4A1APP2-201ENST00000424054 1259 ntBASIC19.89■□□□□ 0.77
SMARCA1P28370 AC009947.1-201ENST00000444350 727 ntBASIC19.89■□□□□ 0.77
SMARCA1P28370 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.89■□□□□ 0.77
SMARCA1P28370 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC19.89■□□□□ 0.77
SMARCA1P28370 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.89■□□□□ 0.77
SMARCA1P28370 AC106730.1-201ENST00000566722 1090 ntBASIC19.89■□□□□ 0.77
SMARCA1P28370 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SMARCA1P28370 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SMARCA1P28370 Z83851.2-201ENST00000609564 659 ntBASIC19.89■□□□□ 0.77
SMARCA1P28370 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
SMARCA1P28370 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.89■□□□□ 0.77
SMARCA1P28370 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.89■□□□□ 0.77
SMARCA1P28370 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
SMARCA1P28370 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SMARCA1P28370 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.88■□□□□ 0.77
SMARCA1P28370 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.88■□□□□ 0.77
SMARCA1P28370 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
SMARCA1P28370 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.88■□□□□ 0.77
SMARCA1P28370 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.88■□□□□ 0.77
SMARCA1P28370 AC120114.3-201ENST00000611923 658 ntBASIC19.88■□□□□ 0.77
SMARCA1P28370 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
SMARCA1P28370 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.88■□□□□ 0.77
SMARCA1P28370 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SMARCA1P28370 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SMARCA1P28370 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SMARCA1P28370 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 AL023806.1-201ENST00000603994 1649 ntBASIC19.87■□□□□ 0.77
SMARCA1P28370 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.87■□□□□ 0.77
SMARCA1P28370 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SMARCA1P28370 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 PRSS29P-201ENST00000440800 595 ntBASIC19.87■□□□□ 0.77
SMARCA1P28370 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SMARCA1P28370 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.87■□□□□ 0.77
SMARCA1P28370 AC034105.1-201ENST00000563488 319 ntBASIC19.87■□□□□ 0.77
SMARCA1P28370 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
SMARCA1P28370 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.87■□□□□ 0.77
SMARCA1P28370 LINC02012-201ENST00000608206 1725 ntBASIC19.87■□□□□ 0.77
SMARCA1P28370 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SMARCA1P28370 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC19.86■□□□□ 0.77
SMARCA1P28370 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SMARCA1P28370 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.86■□□□□ 0.77
SMARCA1P28370 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms