Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
BDNFP23560 AC090340.1-201ENST00000620778 4980 ntBASIC18.34■□□□□ 0.53
BDNFP23560 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.34■□□□□ 0.53
BDNFP23560 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.34■□□□□ 0.53
BDNFP23560 MIR940-201ENST00000401276 94 ntBASIC18.34■□□□□ 0.53
BDNFP23560 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC18.34■□□□□ 0.53
BDNFP23560 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.34■□□□□ 0.53
BDNFP23560 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 AL353135.1-201ENST00000606729 504 ntBASIC18.34■□□□□ 0.53
BDNFP23560 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.34■□□□□ 0.53
BDNFP23560 PGM5P2-202ENST00000637225 1043 ntBASIC18.34■□□□□ 0.53
BDNFP23560 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.34■□□□□ 0.53
BDNFP23560 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC18.34■□□□□ 0.53
BDNFP23560 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
BDNFP23560 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
BDNFP23560 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
BDNFP23560 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
BDNFP23560 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.33■□□□□ 0.53
BDNFP23560 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
BDNFP23560 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
BDNFP23560 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
BDNFP23560 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.33■□□□□ 0.52
BDNFP23560 PMS2P1-201ENST00000431037 1228 ntBASIC18.33■□□□□ 0.52
BDNFP23560 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.33■□□□□ 0.52
BDNFP23560 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.33■□□□□ 0.52
BDNFP23560 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC18.33■□□□□ 0.52
BDNFP23560 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
BDNFP23560 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.33■□□□□ 0.52
BDNFP23560 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 NOC2LP2-201ENST00000407594 1944 ntBASIC18.33■□□□□ 0.52
BDNFP23560 AC068880.1-201ENST00000507289 2297 ntBASIC18.33■□□□□ 0.52
BDNFP23560 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
BDNFP23560 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
BDNFP23560 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
BDNFP23560 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC18.32■□□□□ 0.52
BDNFP23560 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.32■□□□□ 0.52
BDNFP23560 AC067852.2-201ENST00000590513 2313 ntBASIC18.32■□□□□ 0.52
BDNFP23560 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 AC009947.1-201ENST00000444350 727 ntBASIC18.32■□□□□ 0.52
BDNFP23560 POLD2P1-201ENST00000511220 997 ntBASIC18.32■□□□□ 0.52
BDNFP23560 KRT18P58-201ENST00000527480 1120 ntBASIC18.32■□□□□ 0.52
BDNFP23560 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.32■□□□□ 0.52
BDNFP23560 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
BDNFP23560 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.32■□□□□ 0.52
BDNFP23560 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
BDNFP23560 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.32■□□□□ 0.52
BDNFP23560 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.31■□□□□ 0.52
BDNFP23560 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 GNAS-203ENST00000306120 1878 ntBASIC18.31■□□□□ 0.52
BDNFP23560 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
BDNFP23560 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.31■□□□□ 0.52
BDNFP23560 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
BDNFP23560 ACTG1P4-201ENST00000425123 1122 ntBASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms