Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
CXCL1P09341 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC13.54□□□□□ -0.24
CXCL1P09341 AC004980.1-204ENST00000429707 299 ntBASIC13.54□□□□□ -0.24
CXCL1P09341 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 DLX3-202ENST00000512495 834 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC13.54□□□□□ -0.24
CXCL1P09341 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.54□□□□□ -0.24
CXCL1P09341 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.54□□□□□ -0.24
CXCL1P09341 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
CXCL1P09341 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
CXCL1P09341 CICP4-201ENST00000447359 2812 ntBASIC13.54□□□□□ -0.24
CXCL1P09341 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC13.53□□□□□ -0.24
CXCL1P09341 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC13.53□□□□□ -0.24
CXCL1P09341 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC13.53□□□□□ -0.24
CXCL1P09341 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC13.53□□□□□ -0.24
CXCL1P09341 UNC93B5-201ENST00000530315 699 ntBASIC13.53□□□□□ -0.24
CXCL1P09341 MTDHP1-201ENST00000605323 784 ntBASIC13.53□□□□□ -0.24
CXCL1P09341 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC13.53□□□□□ -0.24
CXCL1P09341 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
CXCL1P09341 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
CXCL1P09341 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
CXCL1P09341 AC100803.2-201ENST00000562459 1963 ntBASIC13.52□□□□□ -0.24
CXCL1P09341 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.24
CXCL1P09341 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
CXCL1P09341 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
CXCL1P09341 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms