Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 AC211486.1-202ENST00000416371 468 ntBASIC20.45■□□□□ 0.86
HLA-DOAP06340 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 AC211476.1-201ENST00000503899 468 ntBASIC20.45■□□□□ 0.86
HLA-DOAP06340 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 AC004877.2-201ENST00000623941 599 ntBASIC20.45■□□□□ 0.86
HLA-DOAP06340 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 BCAR1-209ENST00000546196 1340 ntBASIC20.45■□□□□ 0.86
HLA-DOAP06340 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC20.45■□□□□ 0.86
HLA-DOAP06340 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DOAP06340 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 AP001160.2-201ENST00000596071 487 ntBASIC20.44■□□□□ 0.86
HLA-DOAP06340 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 AC012317.2-201ENST00000623305 2251 ntBASIC20.44■□□□□ 0.86
HLA-DOAP06340 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 PXK-206ENST00000463280 2825 ntTSL 2 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DOAP06340 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HLA-DOAP06340 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 ALG1L5P-201ENST00000482043 771 ntBASIC20.43■□□□□ 0.86
HLA-DOAP06340 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 SMN2-210ENST00000511812 867 ntTSL 2 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 PDPK2P-202ENST00000562415 1191 ntBASIC20.43■□□□□ 0.86
HLA-DOAP06340 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 AQP6-205ENST00000618286 829 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 C20orf181-201ENST00000623918 480 ntBASIC20.43■□□□□ 0.86
HLA-DOAP06340 AC007064.4-201ENST00000637740 555 ntBASIC20.43■□□□□ 0.86
HLA-DOAP06340 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 PC-214ENST00000628663 1470 ntTSL 5 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HLA-DOAP06340 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HLA-DOAP06340 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HLA-DOAP06340 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
HLA-DOAP06340 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms