Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AL135744.1-201ENST00000565098 629 ntBASIC20.13■□□□□ 0.81
COL2A1P02458 AL009183.1-201ENST00000603760 355 ntBASIC20.13■□□□□ 0.81
COL2A1P02458 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.13■□□□□ 0.81
COL2A1P02458 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC20.13■□□□□ 0.81
COL2A1P02458 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 AC008764.6-201ENST00000595909 2069 ntBASIC20.13■□□□□ 0.81
COL2A1P02458 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
COL2A1P02458 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.13■□□□□ 0.81
COL2A1P02458 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL2A1P02458 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL2A1P02458 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC20.12■□□□□ 0.81
COL2A1P02458 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC20.12■□□□□ 0.81
COL2A1P02458 TIMM8BP1-201ENST00000452384 211 ntBASIC20.12■□□□□ 0.81
COL2A1P02458 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC20.12■□□□□ 0.81
COL2A1P02458 AC109322.1-201ENST00000524499 1264 ntBASIC20.12■□□□□ 0.81
COL2A1P02458 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
COL2A1P02458 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
COL2A1P02458 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.12■□□□□ 0.81
COL2A1P02458 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.12■□□□□ 0.81
COL2A1P02458 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
COL2A1P02458 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL2A1P02458 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.12■□□□□ 0.81
COL2A1P02458 AC016396.2-201ENST00000562575 1417 ntBASIC20.12■□□□□ 0.81
COL2A1P02458 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 SPDYE11-202ENST00000450699 704 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC20.11■□□□□ 0.81
COL2A1P02458 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC20.11■□□□□ 0.81
COL2A1P02458 SPDYE9P-201ENST00000570642 692 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 SPDYE10P-202ENST00000612005 668 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 SPDYE8P-202ENST00000612377 668 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.11■□□□□ 0.81
COL2A1P02458 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
COL2A1P02458 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
COL2A1P02458 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 AL035633.1-201ENST00000406139 838 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC20.11■□□□□ 0.81
COL2A1P02458 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC20.11■□□□□ 0.81
COL2A1P02458 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC20.11■□□□□ 0.81
COL2A1P02458 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC20.11■□□□□ 0.81
COL2A1P02458 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
COL2A1P02458 AC106028.4-201ENST00000614509 607 ntBASIC20.11■□□□□ 0.81
COL2A1P02458 AL138688.1-201ENST00000624851 1594 ntBASIC20.1■□□□□ 0.81
COL2A1P02458 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC20.1■□□□□ 0.81
COL2A1P02458 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC20.1■□□□□ 0.81
COL2A1P02458 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC20.1■□□□□ 0.81
COL2A1P02458 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.1■□□□□ 0.81
COL2A1P02458 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
COL2A1P02458 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 AL161645.1-201ENST00000622716 1255 ntBASIC20.1■□□□□ 0.81
COL2A1P02458 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC20.1■□□□□ 0.81
COL2A1P02458 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
COL2A1P02458 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
COL2A1P02458 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.09■□□□□ 0.81
COL2A1P02458 AC116353.5-201ENST00000638148 1699 ntBASIC20.09■□□□□ 0.81
COL2A1P02458 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
COL2A1P02458 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms