Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 AC079776.2-201ENST00000641154 1609 ntBASIC20.13■□□□□ 0.81
CTDNEP1O95476 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 AP005117.1-201ENST00000584346 1413 ntBASIC20.13■□□□□ 0.81
CTDNEP1O95476 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 KRT16P4-201ENST00000453883 522 ntBASIC20.13■□□□□ 0.81
CTDNEP1O95476 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 AL732292.2-201ENST00000609649 430 ntBASIC20.13■□□□□ 0.81
CTDNEP1O95476 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTDNEP1O95476 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.13■□□□□ 0.81
CTDNEP1O95476 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 STX3-203ENST00000529177 1571 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 AC084018.2-201ENST00000613093 2607 ntBASIC20.12■□□□□ 0.81
CTDNEP1O95476 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 AL020989.1-201ENST00000422979 469 ntBASIC20.12■□□□□ 0.81
CTDNEP1O95476 HCG4P8-203ENST00000443049 980 ntBASIC20.12■□□□□ 0.81
CTDNEP1O95476 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 COX5A-204ENST00000567270 579 ntTSL 3 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 FRMD8P1-201ENST00000440433 1524 ntBASIC20.12■□□□□ 0.81
CTDNEP1O95476 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTDNEP1O95476 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CTDNEP1O95476 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 SRP19-202ENST00000445150 833 ntTSL 2 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC20.11■□□□□ 0.81
CTDNEP1O95476 RNF216P1-203ENST00000404404 2427 ntBASIC20.11■□□□□ 0.81
CTDNEP1O95476 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CTDNEP1O95476 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDNEP1O95476 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDNEP1O95476 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC20.1■□□□□ 0.81
CTDNEP1O95476 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CTDNEP1O95476 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTDNEP1O95476 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC20.1■□□□□ 0.81
CTDNEP1O95476 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms