Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 AC073347.1-201ENST00000421633 2643 ntBASIC17.45■□□□□ 0.38
SHOX2O60902 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.45■□□□□ 0.38
SHOX2O60902 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SHOX2O60902 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC17.45■□□□□ 0.38
SHOX2O60902 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.44■□□□□ 0.38
SHOX2O60902 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.44■□□□□ 0.38
SHOX2O60902 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SHOX2O60902 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.44■□□□□ 0.38
SHOX2O60902 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.44■□□□□ 0.38
SHOX2O60902 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 AC011298.2-201ENST00000617989 482 ntBASIC17.44■□□□□ 0.38
SHOX2O60902 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SHOX2O60902 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.44■□□□□ 0.38
SHOX2O60902 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SHOX2O60902 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC17.44■□□□□ 0.38
SHOX2O60902 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SHOX2O60902 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHOX2O60902 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.43■□□□□ 0.38
SHOX2O60902 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 RNA5SP413-201ENST00000516373 109 ntBASIC17.43■□□□□ 0.38
SHOX2O60902 AC090192.1-201ENST00000517740 490 ntBASIC17.43■□□□□ 0.38
SHOX2O60902 AL603832.2-201ENST00000566195 2125 ntBASIC17.43■□□□□ 0.38
SHOX2O60902 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.43■□□□□ 0.38
SHOX2O60902 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
SHOX2O60902 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHOX2O60902 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SHOX2O60902 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.42■□□□□ 0.38
SHOX2O60902 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC17.42■□□□□ 0.38
SHOX2O60902 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHOX2O60902 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms