Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 AC133963.1-201ENST00000504166 1679 ntBASIC16.21■□□□□ 0.19
PRKNO60260 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
PRKNO60260 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PRKNO60260 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 HLA-J-201ENST00000462773 1622 ntBASIC16.21■□□□□ 0.19
PRKNO60260 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
PRKNO60260 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.21■□□□□ 0.19
PRKNO60260 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 AL020989.1-201ENST00000422979 469 ntBASIC16.21■□□□□ 0.19
PRKNO60260 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.21■□□□□ 0.19
PRKNO60260 PNMT-203ENST00000581428 677 ntTSL 2 BASIC16.21■□□□□ 0.19
PRKNO60260 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 FAM215A-202ENST00000632077 792 ntBASIC16.21■□□□□ 0.19
PRKNO60260 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PRKNO60260 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
PRKNO60260 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 AC003669.1-201ENST00000334569 611 ntBASIC16.2■□□□□ 0.18
PRKNO60260 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.2■□□□□ 0.18
PRKNO60260 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 STK19B-204ENST00000512515 211 ntBASIC16.2■□□□□ 0.18
PRKNO60260 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 AP001005.1-201ENST00000571755 1248 ntBASIC16.2■□□□□ 0.18
PRKNO60260 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.2■□□□□ 0.18
PRKNO60260 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.2■□□□□ 0.18
PRKNO60260 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.2■□□□□ 0.18
PRKNO60260 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PRKNO60260 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 AC139713.2-201ENST00000641328 2723 ntBASIC16.2■□□□□ 0.18
PRKNO60260 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 AC141586.5-201ENST00000624546 2050 ntBASIC16.2■□□□□ 0.18
PRKNO60260 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PRKNO60260 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.2■□□□□ 0.18
PRKNO60260 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
PRKNO60260 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
PRKNO60260 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
PRKNO60260 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.19■□□□□ 0.18
PRKNO60260 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PRKNO60260 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
PRKNO60260 PENK-208ENST00000523051 772 ntTSL 5 BASIC16.19■□□□□ 0.18
PRKNO60260 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.19■□□□□ 0.18
PRKNO60260 AC012640.2-201ENST00000561606 901 ntBASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms