Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC29.42■■■□□ 2.3
CUX2O14529 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
CUX2O14529 STK19B-204ENST00000512515 211 ntBASIC29.42■■■□□ 2.3
CUX2O14529 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC29.42■■■□□ 2.3
CUX2O14529 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC29.42■■■□□ 2.3
CUX2O14529 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC29.42■■■□□ 2.3
CUX2O14529 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC29.42■■■□□ 2.3
CUX2O14529 AC008735.3-201ENST00000596646 500 ntBASIC29.42■■■□□ 2.3
CUX2O14529 AC008494.3-201ENST00000606615 944 ntBASIC29.42■■■□□ 2.3
CUX2O14529 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC29.42■■■□□ 2.3
CUX2O14529 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC29.42■■■□□ 2.3
CUX2O14529 PPA1-206ENST00000625364 644 ntTSL 5 BASIC29.42■■■□□ 2.3
CUX2O14529 RAB34-223ENST00000636154 730 ntTSL 2 BASIC29.42■■■□□ 2.3
CUX2O14529 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC29.41■■■□□ 2.3
CUX2O14529 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC29.41■■■□□ 2.3
CUX2O14529 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC29.41■■■□□ 2.3
CUX2O14529 RN7SL219P-201ENST00000582872 296 ntBASIC29.41■■■□□ 2.3
CUX2O14529 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
CUX2O14529 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC29.4■■■□□ 2.3
CUX2O14529 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC29.4■■■□□ 2.3
CUX2O14529 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
CUX2O14529 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 AC087499.6-201ENST00000411576 835 ntBASIC29.4■■■□□ 2.3
CUX2O14529 ACTG1P4-201ENST00000425123 1122 ntBASIC29.4■■■□□ 2.3
CUX2O14529 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC29.4■■■□□ 2.3
CUX2O14529 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC29.4■■■□□ 2.3
CUX2O14529 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC29.4■■■□□ 2.3
CUX2O14529 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 TECR-220ENST00000600083 1204 ntTSL 2 BASIC29.4■■■□□ 2.3
CUX2O14529 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC29.4■■■□□ 2.3
CUX2O14529 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
CUX2O14529 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC29.4■■■□□ 2.3
CUX2O14529 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
CUX2O14529 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX2O14529 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC29.39■■■□□ 2.3
CUX2O14529 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
CUX2O14529 AC126763.1-201ENST00000552015 2118 ntBASIC29.39■■■□□ 2.3
CUX2O14529 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX2O14529 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC29.39■■■□□ 2.3
CUX2O14529 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX2O14529 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC29.39■■■□□ 2.3
CUX2O14529 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
CUX2O14529 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC29.39■■■□□ 2.3
CUX2O14529 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
CUX2O14529 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
CUX2O14529 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC29.39■■■□□ 2.3
CUX2O14529 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC29.39■■■□□ 2.3
CUX2O14529 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC29.39■■■□□ 2.3
CUX2O14529 AC007967.4-201ENST00000614700 386 ntBASIC29.39■■■□□ 2.3
CUX2O14529 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC29.39■■■□□ 2.3
CUX2O14529 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC29.39■■■□□ 2.29
CUX2O14529 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
CUX2O14529 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX2O14529 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC29.38■■■□□ 2.29
CUX2O14529 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 AC087163.2-201ENST00000457299 853 ntBASIC29.38■■■□□ 2.29
CUX2O14529 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC29.38■■■□□ 2.29
CUX2O14529 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC29.38■■■□□ 2.29
CUX2O14529 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX2O14529 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC29.38■■■□□ 2.29
CUX2O14529 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
CUX2O14529 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
CUX2O14529 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC29.37■■■□□ 2.29
CUX2O14529 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX2O14529 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 DUTP2-201ENST00000519164 463 ntBASIC29.37■■■□□ 2.29
CUX2O14529 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC29.37■■■□□ 2.29
CUX2O14529 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX2O14529 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC29.37■■■□□ 2.29
CUX2O14529 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
CUX2O14529 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms