Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 BRWD1P1-201ENST00000401091 371 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 HMGA1P7-201ENST00000406908 502 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 MIR1908-201ENST00000410394 80 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 MYCLP2-201ENST00000449268 967 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 IGHJ2P-201ENST00000454480 60 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 AC106872.11-201ENST00000605838 421 ntBASIC13.33□□□□□ -0.28
COL6A5A8TX70 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
COL6A5A8TX70 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL6A5A8TX70 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 RNA5SP412-201ENST00000516234 123 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 AC015936.2-201ENST00000593177 259 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 AL138918.1-201ENST00000568306 659 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 AC243960.2-201ENST00000600996 747 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 AC004840.1-201ENST00000636359 365 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 GMCL1P1-201ENST00000463439 1581 ntBASIC13.32□□□□□ -0.28
COL6A5A8TX70 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL6A5A8TX70 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL6A5A8TX70 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AL080243.2-201ENST00000418783 582 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 GOLGA2P4-201ENST00000441462 777 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AC026740.1-201ENST00000607068 791 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AC087499.5-201ENST00000452760 1342 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 AC006538.1-201ENST00000567905 1585 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 MIR663B-201ENST00000408361 115 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL6A5A8TX70 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
COL6A5A8TX70 SLC25A6P2-201ENST00000497974 877 ntBASIC13.31□□□□□ -0.28
COL6A5A8TX70 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms